6UOK
Y271G DNA polymerase beta substrate complex with templating cytosine and incoming r8-oxo-GTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-28 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.687, 79.957, 100.832 |
Unit cell angles | 90.00, 97.64, 90.00 |
Refinement procedure
Resolution | 24.140 - 2.550 |
R-factor | 0.2285 |
Rwork | 0.224 |
R-free | 0.27870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.004 |
RMSD bond angle | 0.616 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.590 |
High resolution limit [Å] | 2.550 | 6.880 | 2.550 |
Rmerge | 0.111 | 0.062 | |
Rmeas | 0.124 | 0.069 | |
Rpim | 0.062 | 0.031 | |
Number of reflections | 42693 | 1476 | 1430 |
<I/σ(I)> | 5.8 | ||
Completeness [%] | 99.9 | 99.9 | 99.7 |
Redundancy | 4.8 | 4.4 | 3.9 |
CC(1/2) | 0.994 | 0.385 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 291 | 19% PEG3350, 0.05M Imidazole (pH 8.0), 0.35 Sodium Acetate |