6UL8
RIP2 kinase catalytic domain complex with (5S,6S,8R)-2-(benzo[d]thiazol-5-yl)-6-hydroxy-4,5,6,7,8,9-hexahydro-5,8-methanopyrazolo[1,5-a][1,3]diazocine-3-carboxamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2015-11-11 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 125.677, 125.677, 105.760 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 75.850 - 2.680 |
R-factor | 0.1849 |
Rwork | 0.183 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ar2 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.391 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless (0.5.17) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 105.760 | 2.830 |
High resolution limit [Å] | 2.680 | 2.680 |
Rmerge | 0.111 | 0.654 |
Rmeas | 0.120 | 0.705 |
Rpim | 0.044 | 0.261 |
Total number of observations | 196550 | |
Number of reflections | 27463 | 3944 |
<I/σ(I)> | 12 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.2 | 7.2 |
CC(1/2) | 0.997 | 0.852 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 295 | 85 mM Tris, pH 7.5, 200 mM calcium chloride, 10% PEG400, 5% glycerol, in 24 well Linbro trays at 22 degrees C. Crystals were frozen directly from the tray using paraffin oil as a cryoprotectant. |