6UDG
Crystal structure of a Probable thiol peroxidase from Elizabethkingia anophelis NUHP1
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-F |
| Synchrotron site | APS |
| Beamline | 21-ID-F |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-11-24 |
| Detector | RAYONIX MX-300 |
| Wavelength(s) | 0.97872 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 53.590, 107.800, 113.700 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.700 - 2.650 |
| R-factor | 0.2171 |
| Rwork | 0.209 |
| R-free | 0.28050 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4je1A |
| RMSD bond length | 0.004 |
| RMSD bond angle | 0.733 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | MoRDa |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.700 | 48.700 | 2.720 |
| High resolution limit [Å] | 2.650 | 11.850 | 2.650 |
| Rmerge | 0.070 | 0.034 | 0.618 |
| Rmeas | 0.078 | 0.038 | 0.693 |
| Total number of observations | 95601 | ||
| Number of reflections | 19753 | 258 | 1431 |
| <I/σ(I)> | 14.18 | 33.98 | 2.84 |
| Completeness [%] | 99.7 | 95.6 | 99.8 |
| Redundancy | 4.84 | 3.872 | 4.983 |
| CC(1/2) | 0.998 | 0.999 | 0.882 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Anatrace Morpheus screen, well g8: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD: 20mM of each sodium formate, ammonium acetate, trisodium citrate, sodium potassium Ltartrate, sodium oxamate: 100mM MOPS/HEPES-Na pH 7.5: ElanA.00055.a.B1, PW38308, at 23mg/ml: cryo: direct: tray 294018 g8: puck xoe2-6. |






