6UBP
Crystal structure of a photochemical intermediate of human indoleamine 2,3-dioxygenase 1 in complex with carbon monoxide and tryptophan
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97931 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 86.944, 97.727, 130.628 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.340 - 2.950 |
R-factor | 0.2175 |
Rwork | 0.215 |
R-free | 0.26410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wmu |
RMSD bond length | 0.002 |
RMSD bond angle | 1.229 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.340 | 3.130 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.098 | 2.015 |
Number of reflections | 24106 | 3854 |
<I/σ(I)> | 12.2 | 1.2 |
Completeness [%] | 99.9 | 100 |
Redundancy | 7.6 | 8 |
CC(1/2) | 1.000 | 0.530 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 10 | 277 | 100 mM sodium thiosulfate, 100 mM CAPS, pH 10.0, 20% w/v PEG8000 |