6U7O
HIV-1 wild type protease with GRL-00819A, with phenyl-boronic-acid as P2'-ligand and with a 6-5-5-ring fused crown-like tetrahydropyranofuran as the P2-ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 58.921, 86.479, 45.875 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.410 - 1.330 |
R-factor | 0.1391 |
Rwork | 0.137 |
R-free | 0.17720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nu3 |
RMSD bond length | 0.020 |
RMSD bond angle | 2.331 |
Data reduction software | HKL-2000 (0.716.1) |
Data scaling software | HKL-2000 (0.716.1) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.380 |
High resolution limit [Å] | 1.330 | 2.870 | 1.330 |
Rmerge | 0.061 | 0.045 | 0.749 |
Rmeas | 0.067 | 0.050 | 0.842 |
Rpim | 0.027 | 0.020 | 0.376 |
Total number of observations | 324034 | ||
Number of reflections | 53993 | 5700 | 5048 |
<I/σ(I)> | 12.8 | ||
Completeness [%] | 98.9 | 98.9 | 94.1 |
Redundancy | 6 | 6.1 | 4.3 |
CC(1/2) | 0.998 | 0.713 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 1.4 M sodium chloride, 0.1 M sodium acetate buffer pH 6.0 |