6TY6
Variant W229D/F290W-2 of the last common ancestor of Gram-negative bacteria beta-lactamase class A (GNCA4) bound to 5(6)-nitrobenzotriazole (TS-analog)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97926 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 78.384, 148.357, 246.008 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.480 - 1.800 |
R-factor | 0.202 |
Rwork | 0.201 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fqk |
RMSD bond length | 0.019 |
RMSD bond angle | 1.439 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.480 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.089 | 1.440 |
Rmeas | 0.100 | 1.600 |
Rpim | 0.045 | 0.687 |
Number of reflections | 130796 | 13114 |
<I/σ(I)> | 10.77 | 1.2 |
Completeness [%] | 98.6 | 99.39 |
Redundancy | 5.2 | 5.4 |
CC(1/2) | 0.997 | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 4 | 293 | 5.0 M Sodium formate, 100 mM AcNa pH 4-0 |