6TXD
Variant W229D/F290W-12 of the last common ancestor of Gram-negative bacteria beta-lactamase class A (GNCA4)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 77.314, 148.228, 245.962 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.740 - 2.000 |
R-factor | 0.213 |
Rwork | 0.212 |
R-free | 0.23520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fqk |
RMSD bond length | 0.002 |
RMSD bond angle | 0.590 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 71.740 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.103 | 0.678 |
Rmeas | 0.118 | 0.771 |
Rpim | 0.056 | 0.361 |
Number of reflections | 95172 | 9368 |
<I/σ(I)> | 11.89 | 2.63 |
Completeness [%] | 99.0 | 98.87 |
Redundancy | 4.5 | 4.5 |
CC(1/2) | 0.993 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 4 | 293 | 5.0 M Sodium formate, 100 mM AcNa pH 4.0 |