6TVC
Crystal structure of the haemagglutinin from a transmissible H10N7 seal influenza virus isolated in Netherland
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.380, 214.950, 74.670 |
Unit cell angles | 90.00, 97.58, 90.00 |
Refinement procedure
Resolution | 51.480 - 1.840 |
R-factor | 0.233 |
Rwork | 0.232 |
R-free | 0.25270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4d00 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.057 |
Data reduction software | DIALS |
Data scaling software | xia2 |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.480 | 1.870 |
High resolution limit [Å] | 1.840 | 1.840 |
Number of reflections | 171611 | 8592 |
<I/σ(I)> | 10.8 | |
Completeness [%] | 99.1 | 99.9 |
Redundancy | 3.3 | 3.4 |
CC(1/2) | 1.000 | 0.500 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 26%-31% PEG600, 0.1M HEPES pH7.5 or 0.1M tris pH8.0 |