6TRV
Structure of SapL1 lectin in complex with alpha methyl fucoside
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SOLEIL BEAMLINE PROXIMA 2 |
| Synchrotron site | SOLEIL |
| Beamline | PROXIMA 2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-02-24 |
| Detector | DECTRIS EIGER2 X 9M |
| Wavelength(s) | 0.97857 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 76.064, 45.664, 83.485 |
| Unit cell angles | 90.00, 105.05, 90.00 |
Refinement procedure
| Resolution | 39.990 - 2.400 |
| Rwork | 0.175 |
| R-free | 0.23980 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4d4u |
| RMSD bond length | 0.017 |
| RMSD bond angle | 1.938 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | PHASER (2.8.2) |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 39.990 | 2.490 |
| High resolution limit [Å] | 2.400 | 2.400 |
| Rmerge | 0.085 | 0.428 |
| Rpim | 0.082 | 0.417 |
| Number of reflections | 21570 | 2212 |
| <I/σ(I)> | 5.3 | 1.6 |
| Completeness [%] | 98.2 | 98.4 |
| Redundancy | 2.7 | 2.7 |
| CC(1/2) | 0.991 | 0.700 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 292 | 1.5 M ammonium sulfate (NH4)2SO4 100 mM BICINE pH 8.5 12% Glycerol 10% Glycerol were added for cryoprotection |
