6TQR
The crystal structure of the MSP domain of human VAP-A in complex with the Phospho-FFAT motif of STARD3.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-04-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 |
Unit cell lengths | 39.140, 43.780, 83.640 |
Unit cell angles | 89.46, 92.91, 105.13 |
Refinement procedure
Resolution | 42.260 - 1.850 |
R-factor | 0.2068 |
Rwork | 0.204 |
R-free | 0.25430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1z9o |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev-3699) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.260 | 42.260 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.208 | 0.043 | |
Rmeas | 0.248 | 0.051 | |
Rpim | 0.133 | ||
Number of reflections | 42485 | 512 | 1936 |
<I/σ(I)> | 4.57 | 25.58 | |
Completeness [%] | 92.8 | 100 | 57.1 |
Redundancy | 3.338 | 3.49 | 2.456 |
CC(1/2) | 0.990 | 0.997 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 25% PEG 2000 MME, 0.1 M HEPES pH 7.5 |