6TPO
Conformation of cd1 nitrite reductase NirS without bound heme d1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.033217 |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 67.245, 67.245, 277.104 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.364 - 1.861 |
R-factor | 0.1677 |
Rwork | 0.166 |
R-free | 0.19370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1hzu |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER |
Refinement software | PHENIX (dev-3714) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.280 | 69.280 | 1.960 |
High resolution limit [Å] | 1.860 | 5.880 | 1.860 |
Rmerge | 0.157 | 0.091 | 1.406 |
Rmeas | 0.160 | 0.094 | 1.444 |
Rpim | 0.033 | 0.020 | 0.326 |
Total number of observations | 1316645 | 45289 | 146465 |
Number of reflections | 54867 | 2025 | 7812 |
<I/σ(I)> | 18 | 43.3 | 2.8 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 24 | 22.4 | 18.7 |
CC(1/2) | 0.997 | 0.989 | 0.806 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 0.1M Phosphate/citrate pH4.2 40% (v/v) PEG300 |