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6TEW

Crystal structure of human protein kinase CK2alpha' (CSNK2A2 gene product) in complex with the 2-aminothiazole-type inhibitor 27

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-15
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9202
Spacegroup nameP 1
Unit cell lengths46.108, 47.380, 50.270
Unit cell angles113.55, 90.28, 91.19
Refinement procedure
Resolution46.090 - 1.082
R-factor0.1463
Rwork0.146
R-free0.16870
Structure solution methodAB INITIO PHASING
RMSD bond length0.014
RMSD bond angle1.203
Data reduction softwareXDS
Data scaling softwareautoPROC
Phasing softwareArcimboldo
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.0941.211
High resolution limit [Å]1.0821.082
Rmerge0.0631.585
Rmeas0.0681.718
Rpim0.0260.654
Number of reflections1064545323
<I/σ(I)>12
Completeness [%]64.0
Redundancy6.9
CC(1/2)0.9990.497
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293RESERVOIR COMPOSITION: 28 % (W/V) PEG6000, 0.9 M LICL, 0.1 M, TRIS/HCL, PH 8.5; CRYSTALLIZATION DROP COMPOSITION PRIOR TO EQUILIBRATION: 0.01 ML RESERVOIR SOLUTION PLUS 0.02 ML CK2ALPHA' (MUTANT CYS336SER)/INHIBITOR MB002 MIXTURE (0.180 ML 6 MG/ML CK2ALPHA-'CYS336SER, 0.5 M NACL, 25 MM TRIS/HCL, PH 8.5, MIXED AND PRE-EQUILIBRATED WITH 0.02 ML 10 MM MB002 IN DIMETHYL SULFOXIDE); the inhibitor MB002 was replaced by extensive soaking with the 2-aminothiazole-type inhibitor 27; VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K

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PDB entries from 2024-05-15

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