6TCN
Crystal structure of the omalizumab Fab - crystal form II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-10-24 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 85.295, 73.569, 87.098 |
Unit cell angles | 90.00, 116.58, 90.00 |
Refinement procedure
Resolution | 77.893 - 2.300 |
R-factor | 0.1897 |
Rwork | 0.188 |
R-free | 0.22580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6tcm |
RMSD bond length | 0.002 |
RMSD bond angle | 0.535 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.893 | 2.420 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.099 | 0.674 |
Rpim | 0.060 | 0.454 |
Number of reflections | 42827 | 6015 |
<I/σ(I)> | 9 | 1.8 |
Completeness [%] | 99.5 | 96.9 |
Redundancy | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 291 | 0.1M phosphate-citrate pH4.2, 20% PEG 1000 and 0.2M lithium sulphate. Cryoprotected with 0.1M sodium acetate pH4.6, 25% PEG 4000 and 18% ethylene glycol. |