6T3S
Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 24-ID-C |
| Synchrotron site | APS |
| Beamline | 24-ID-C |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-07-10 |
| Detector | DECTRIS PILATUS 6M-F |
| Wavelength(s) | 0.979500 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 89.890, 95.240, 227.896 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.890 - 3.280 |
| R-factor | 0.1983 |
| Rwork | 0.197 |
| R-free | 0.22960 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4fax |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.792 |
| Data reduction software | XDS (VERSION March 30, 2013) |
| Data scaling software | SCALA (3.3.20) |
| Phasing software | PHASER (2.5.5) |
| Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.893 | 48.893 | 3.460 |
| High resolution limit [Å] | 3.279 | 10.370 | 3.280 |
| Rmerge | 0.033 | 0.995 | |
| Rmeas | 0.089 | 0.041 | 1.197 |
| Rpim | 0.035 | 0.018 | 0.467 |
| Total number of observations | 201533 | 5974 | 28777 |
| Number of reflections | 30804 | 1079 | 4434 |
| <I/σ(I)> | 15.8 | 42.3 | 2.5 |
| Completeness [%] | 99.9 | 98.1 | 99.8 |
| Redundancy | 6.5 | 5.5 | 6.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7 | 303 | 50 mM Na-HEPES pH 7.0, 100 mM magnesium acetate, 150 mM sodium chloride, 4% PEG 8000 |






