Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6T3H

Structure of the Rap conjugation gene regulator of the plasmid pLS20 in apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2016-02-16
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97927
Spacegroup nameP 21 21 2
Unit cell lengths111.790, 174.487, 49.879
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution53.231 - 3.039
R-factor0.2042
Rwork0.201
R-free0.25930
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ulq
RMSD bond length0.004
RMSD bond angle0.734
Data reduction softwareXDS (Jun 1, 2017)
Data scaling softwareautoPROC (staraniso 1.0.4)
Phasing softwarePHASER (2.6.1)
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]87.2003.092
High resolution limit [Å]3.0393.039
Rmerge0.0640.900
Rmeas0.0751.041
Rpim0.0440.615
Number of reflections18645797
<I/σ(I)>14.81.4
Completeness [%]95.382.5
Redundancy4.64.5
CC(1/2)0.6070.607
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP729010% Peg 6000, 0.1M Hepes pH 7. Protein concentration 10mg/mL

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon