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6SYV

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with D-glucuronate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-06
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.873127
Spacegroup nameP 1
Unit cell lengths43.507, 44.497, 50.367
Unit cell angles76.43, 66.96, 70.22
Refinement procedure
Resolution36.220 - 1.120
R-factor0.1634
Rwork0.162
R-free0.18160
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6gs0
RMSD bond length0.009
RMSD bond angle1.186
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX (1.15.2_3472)
Refinement softwarePHENIX (1.15.2_3472)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.2201.160
High resolution limit [Å]1.1201.120
Rmerge0.0881.044
Rmeas0.1051.255
Rpim0.0560.686
Number of reflections1021174777
<I/σ(I)>6.120.76
Completeness [%]81.738.26
Redundancy3.33.2
CC(1/2)0.9950.452
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298Enzyme mixed 50/50 with reservoir solution containing Morpheus screen solution G12: 0.1 M Carboxylic acids (0.2M Sodium formate; 0.2M Ammonium acetate; 0.2M Sodium citrate tribasic dihydrate; 0.2M Sodium potassium tartrate tetrahydrate; 0.2M Sodium oxamate), 0.1 M Buffer System 3 pH 8.5 (Tris; BICINE), and 50 % v/v Precipitant Mix 4 (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350).

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PDB entries from 2024-05-15

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