Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6SAZ

Cleaved human fetuin-b in complex with crayfish astacin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-11
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0032
Spacegroup nameP 61
Unit cell lengths90.700, 90.700, 283.900
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution78.500 - 3.000
Rwork0.185
R-free0.24700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ht9
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareBUSTER-TNT
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]78.5003.180
High resolution limit [Å]3.0003.000
Rmerge0.1841.565
Rmeas0.1951.660
Number of reflections262874165
<I/σ(I)>11.1
Completeness [%]99.798.9
Redundancy9.28.9
CC(1/2)0.9960.626
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Crystallization assays were set up following the sitting-drop vapor diffusion method at the joint IBMB/IRB Automated Crystallography Platform of Barcelona Science Park. A Tecan robot (Tecan Trading) was used to prepare reservoir solutions, and a Cartesian Microsys 4000 XL robot (Genomic Solutions) or a Phoenix nanodrop robot (Art Robbins Instruments) dispensed nanocrystallization drops on 96x2-well Swissci Polystyrene MRC Crystallization Plates (Molecular Dimensions). Plates were stored at 4 or 20 degrees in thermostatic crystal farms (Bruker AXS). The astacin-hFB complex only crystallized after incubating the inhibitor (at 7.5 mg/mL) with six-fold molar excess of the peptidase in 10 mM Tris-HCl, 140 mM sodium chloride, pH 6.8. Crystals were obtained at 20 degrees in 200 nL:100 nL drops with protein complex solution and 20 percent (w/v) polyethylene glycol 3,350, 0.2 M sodium tartrate dibasic as reservoir solution.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon