6S93
Crystal structure of group B of Usutu virus envelope protein domain III
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.972 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 47.060, 55.530, 128.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.063 - 1.670 |
R-factor | 0.1991 |
Rwork | 0.198 |
R-free | 0.22490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6s95 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.892 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.236 | 47.063 | 1.760 |
High resolution limit [Å] | 1.670 | 5.280 | 1.670 |
Rmerge | 0.078 | 0.505 | |
Rmeas | 0.115 | 0.090 | 0.573 |
Rpim | 0.055 | 0.043 | 0.265 |
Total number of observations | 170286 | 5974 | 25460 |
Number of reflections | 39319 | 1392 | 5687 |
<I/σ(I)> | 8.1 | 15.3 | 2.4 |
Completeness [%] | 98.7 | 98.9 | 99.2 |
Redundancy | 4.3 | 4.3 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 298 | Na3 Cit, NH4 Acet, PEG 4000 |