6S75
Crystal structure of Nek7 bound to compound 51
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.96861 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.405, 168.971, 84.565 |
Unit cell angles | 90.00, 90.03, 90.00 |
Refinement procedure
Resolution | 75.620 - 3.300 |
R-factor | 0.2629 |
Rwork | 0.260 |
R-free | 0.31690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6GT1 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.552 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHENIX (1.14_3260) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.620 | 3.420 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.078 | |
Number of reflections | 21271 | 1700 |
<I/σ(I)> | 15.28 | |
Completeness [%] | 96.5 | |
Redundancy | 6.6 | |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 20 % w/v Polyethylene glycol 3,350, 150 mM di-Sodium DL-malate; pH 7.0, 3% w/v 1,6-Hexanediol |