6S2T
Structure of the N-terminal catalytic region of T. thermophilus Rel bound to ppGpp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-22 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.98012 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 87.927, 87.927, 184.252 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.170 - 2.750 |
R-factor | 0.197 |
Rwork | 0.196 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vj7 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.100 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | Rosetta |
Refinement software | BUSTER |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 92.130 | 2.900 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.160 | 2.452 |
Rmeas | 0.204 | 2.508 |
Rpim | 0.041 | 0.522 |
Number of reflections | 14292 | 2751 |
<I/σ(I)> | 13.7 | |
Completeness [%] | 99.8 | 98.9 |
Redundancy | 24.8 | 22.6 |
CC(1/2) | 0.999 | 0.627 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.2M Sodium formate; 0.2M Ammonium acetate; 0.2M Sodium citrate tribasic dihydrate; 0.2M Sodium potassium tartrate tetrahydrate; 0.2M Sodium oxamate, Sodium HEPES; MOPS (acid) pH 7.5, 25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350 |