6S1J
Crystal Structure of DYRK1A with small molecule inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-21 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9762 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 99.202, 69.671, 67.440 |
Unit cell angles | 90.00, 117.54, 90.00 |
Refinement procedure
Resolution | 59.801 - 1.408 |
R-factor | 0.1564 |
Rwork | 0.155 |
R-free | 0.17580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mq1 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.800 | 59.800 | 1.480 |
High resolution limit [Å] | 1.410 | 4.450 | 1.410 |
Rmerge | 0.195 | 0.118 | 2.681 |
Rmeas | 0.204 | 0.123 | 2.847 |
Rpim | 0.058 | 0.034 | 0.929 |
Total number of observations | 924128 | 31388 | 76346 |
Number of reflections | 75809 | 2569 | 8676 |
<I/σ(I)> | 9.5 | 20.9 | 1.8 |
Completeness [%] | 96.4 | 100 | 76 |
Redundancy | 12.2 | 12.2 | 8.8 |
CC(1/2) | 0.996 | 0.994 | 0.400 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 2.2M ammonium sulfate -- 0.1M citrate pH 5.7 -- 0.2M sodium/potassium tartrate |