6RXQ
Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after soaking
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.380, 94.070, 94.060 |
Unit cell angles | 90.00, 90.03, 90.00 |
Refinement procedure
Resolution | 45.115 - 1.700 |
R-factor | 0.1991 |
Rwork | 0.199 |
R-free | 0.22760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 1S5P |
RMSD bond length | 0.007 |
RMSD bond angle | 1.384 |
Data reduction software | XDS (VERSION JAN 31, 2018) |
Data scaling software | XSCALE (VERSION JAN 31, 2018) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.115 | 45.115 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.047 | 0.023 | 1.496 |
Rmeas | 0.051 | 0.025 | 1.619 |
Total number of observations | 788173 | ||
Number of reflections | 117240 | 1362 | 8597 |
<I/σ(I)> | 20.1 | 67.66 | 1.25 |
Completeness [%] | 100.0 | 99.4 | 99.9 |
Redundancy | 6.723 | 7.08 | 6.884 |
CC(1/2) | 1.000 | 0.999 | 0.639 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 0.1 mM Bis-Tris, 0.03M HCl, 23% PEG3350, soaked 36h with 1 mM NAD+ |