6RV6
Structure of properdin lacking TSR3 based on anomalous data
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 2.47968 |
Spacegroup name | I 41 |
Unit cell lengths | 219.790, 219.790, 47.440 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 77.707 - 3.507 |
R-factor | 0.2649 |
Rwork | 0.264 |
R-free | 0.28350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | electron density for TB-TSR1-TSR5-TSR6 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.384 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 155.000 | 3.600 |
High resolution limit [Å] | 3.507 | 3.507 |
Number of reflections | 27811 | 2051 |
<I/σ(I)> | 12.2 | |
Completeness [%] | 99.9 | |
Redundancy | 20.07 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 292 | 1.0 M lithium sulfate, 0.1 M sodium acetate pH 4.0, 0.1 M barium chloride |