6RLO
Crystal structure of AT1412dm Fab fragment in complex with CD9 large extracellular loop
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE MASSIF-3 |
| Synchrotron site | ESRF |
| Beamline | MASSIF-3 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-12-01 |
| Detector | DECTRIS EIGER X 4M |
| Wavelength(s) | 0.96 |
| Spacegroup name | P 1 |
| Unit cell lengths | 73.776, 89.858, 91.533 |
| Unit cell angles | 71.12, 89.59, 85.96 |
Refinement procedure
| Resolution | 84.800 - 2.200 |
| R-factor | 0.2553 |
| Rwork | 0.254 |
| R-free | 0.28660 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6rlm |
| RMSD bond length | 0.004 |
| RMSD bond angle | 1.340 |
| Data reduction software | DIALS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 84.800 | 84.800 | 2.240 |
| High resolution limit [Å] | 2.200 | 12.050 | 2.200 |
| Rmerge | 0.199 | 0.046 | 1.048 |
| Rmeas | 0.231 | 0.055 | 1.216 |
| Rpim | 0.117 | 0.030 | 0.615 |
| Total number of observations | 406120 | 2418 | 20862 |
| Number of reflections | 104319 | 670 | 5321 |
| <I/σ(I)> | 5 | 11.9 | 1.3 |
| Completeness [%] | 92.6 | 97.8 | 94.6 |
| Redundancy | 3.9 | 3.6 | 3.9 |
| CC(1/2) | 0.984 | 0.999 | 0.982 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 293.15 | PEG 1000, sodium chloride, sodium potassium phosphate |
