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6RK9

Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, N-oxalylglycine and cyclic peptide substrate mimic of factor X

Replaces:  5JZZ
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2014-04-04
DetectorRIGAKU SATURN 944+
Wavelength(s)1.54
Spacegroup nameP 1
Unit cell lengths49.472, 59.243, 95.665
Unit cell angles103.97, 91.49, 92.70
Refinement procedure
Resolution31.997 - 2.292
R-factor0.2117
Rwork0.211
R-free0.23500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jqy
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.380
High resolution limit [Å]2.2924.9502.292
Rmerge0.1500.0610.992
Rmeas0.1450.067
Rpim0.0690.0280.466
Number of reflections4694846504743
<I/σ(I)>6
Completeness [%]99.999.6100
Redundancy5.65.85.5
CC(1/2)0.9970.671
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5277100 mM Bis-tris propane, 200 mM potassium thiocyanate, 20% PEG 3350, 2 mM N-oxalylglycine, 1 mM manganese chloride, 3.3 mM cyclic peptide, 18 mg/ml asph protein

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PDB entries from 2024-05-15

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