6R4M
Crystal structure of S. cerevisia Niemann-Pick type C protein NPC2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97242 |
Spacegroup name | P 61 |
Unit cell lengths | 205.320, 205.320, 39.080 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.453 - 2.800 |
R-factor | 0.2376 |
Rwork | 0.236 |
R-free | 0.26180 |
Structure solution method | SIRAS |
RMSD bond length | 0.007 |
RMSD bond angle | 1.249 |
Data reduction software | XDS (20180126) |
Data scaling software | XSCALE (20180808) |
Phasing software | MLPHARE |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.453 | 44.453 | 2.900 |
High resolution limit [Å] | 2.800 | 20.000 | 2.800 |
Rmerge | 0.081 | 0.027 | 1.415 |
Rmeas | 0.095 | 0.031 | 1.694 |
Total number of observations | 88986 | ||
Number of reflections | 23790 | 76 | 2308 |
<I/σ(I)> | 9.15 | 23.51 | 0.73 |
Completeness [%] | 99.5 | 89.4 | 99.4 |
Redundancy | 3.74 | 3 | 3.233 |
CC(1/2) | 0.998 | 0.999 | 0.372 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.1 | 292 | Ammoniumcitrate dibasic, PEG 3350 |