6QXA
Structure of membrane bound pyrophosphatase from Thermotoga maritima in complex with imidodiphosphate and N-[(2-amino-6-benzothiazolyl)methyl]-1H-indole-2-carboxamide (ATC)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9677 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 98.101, 141.594, 251.980 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.480 - 3.410 |
R-factor | 0.2307 |
Rwork | 0.228 |
R-free | 0.28410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lzq |
RMSD bond length | 0.002 |
RMSD bond angle | 0.451 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.480 | 3.725 |
High resolution limit [Å] | 3.424 | 3.424 |
Rmerge | 0.110 | 0.980 |
Rmeas | 0.130 | 1.110 |
Rpim | 0.060 | 0.520 |
Number of reflections | 48311 | 1846 |
<I/σ(I)> | 9.2 | 1.5 |
Completeness [%] | 93.7 | 57.4 |
Redundancy | 5.1 | 4.3 |
CC(1/2) | 0.999 | 0.560 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.1 M MES pH 6.5, 0.1 M NaCl, 33% polyethylene glycol (PEG) 400, and 4% ethylene glycol |