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6QJE

Structure of human galactokinase 1 bound with 4-{[2-(Methylsulfonyl)-1H-imidazol-1-yl]methyl}-1,3-thiazole

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91587
Spacegroup nameP 1 21 1
Unit cell lengths73.703, 114.873, 121.044
Unit cell angles90.00, 100.56, 90.00
Refinement procedure
Resolution82.646 - 2.400
R-factor0.2196
Rwork0.217
R-free0.26900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1wuu
RMSD bond length0.004
RMSD bond angle0.880
Data reduction softwareXDS
Data scaling softwareAimless (0.7.2)
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]82.65082.6502.150
High resolution limit [Å]2.4006.4402.040
Rmerge0.0920.0261.900
Rmeas0.1100.0312.256
Rpim0.0590.0171.206
Number of reflections126441408218416
<I/σ(I)>7.5
Completeness [%]99.79999.8
Redundancy3.53.33.4
CC(1/2)0.9980.9990.474
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M MOPS/sodium HEPES pH 7.0-7.5, 40-50 % Morpheus Precipitant Mix 4 (50% mix = 12.5% MPD, 12.5% PEG1000, 12.5% PEG3350), 0.1 M Morpheus Carboxylic acids mix (0.02M each of:sodium formate, ammonium acetate, sodium citrate tribasic dehydrate, sodium potassium tartrate tetrahydrate and sodium oxamate).

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PDB entries from 2024-05-15

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