6QB2
Crystal structure of the cystatin-based engineered protein scaffold SQT-1C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 96.124, 96.124, 29.859 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.990 - 2.500 |
R-factor | 0.276 |
Rwork | 0.275 |
R-free | 0.29480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k9m |
RMSD bond length | 0.002 |
RMSD bond angle | 0.575 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.990 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.058 | 0.920 |
Rmeas | 0.061 | |
Rpim | 0.018 | 0.270 |
Number of reflections | 5209 | 497 |
<I/σ(I)> | 17.39 | 2.37 |
Completeness [%] | 99.8 | 99.6 |
Redundancy | 11.9 | 12.6 |
CC(1/2) | 0.998 | 0.685 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 38% Dioxane |