6Q2L
The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-30 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.223, 47.695, 64.652 |
Unit cell angles | 90.00, 113.60, 90.00 |
Refinement procedure
Resolution | 37.150 - 1.800 |
R-factor | 0.197 |
Rwork | 0.195 |
R-free | 0.23200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6q2k |
RMSD bond length | 0.008 |
RMSD bond angle | 1.299 |
Data reduction software | HKL-2000 (2.3.8) |
Data scaling software | HKL-2000 (2.3.8) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.084 | 0.419 |
Rmeas | 0.097 | 0.567 |
Rpim | 0.047 | 0.380 |
Number of reflections | 31075 | 1321 |
<I/σ(I)> | 11.8 | 1.6 |
Completeness [%] | 98.9 | 83.9 |
Redundancy | 3.3 | 1.5 |
CC(1/2) | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 20-25% PEG 8000, 0.1M succinic acid, pH 5.0-5.5, 100mM MgCl2 |