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6PZ6

Co-assembly of VIQKI D452(beta-L-homoaspartic acid) with human parainfluenza virus type 3 (HPIV3) fusion glycoprotein N-terminal heptad repeat domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2019-06-08
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.9786
Spacegroup nameP 1 21 1
Unit cell lengths39.640, 52.450, 55.620
Unit cell angles90.00, 99.20, 90.00
Refinement procedure
Resolution27.450 - 1.700
R-factor0.2298
Rwork0.228
R-free0.25450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6nro
RMSD bond length0.005
RMSD bond angle0.631
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.4501.730
High resolution limit [Å]1.7001.700
Rmeas0.0491.940
Rpim0.0180.698
Number of reflections245101206
<I/σ(I)>19.91
Completeness [%]98.498.29
Redundancy7.57.6
CC(1/2)0.9990.552
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529830 mM NaF, 30 mM NaBr, 30 mM NaI, 100 mM HEPES/MOPS buffer (pH 7.5), 12.5% PEG1000, 12.5% PEG3350, 12.5% 2-methyl-2,4-pentanediol

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PDB entries from 2024-05-15

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