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6PYQ

Assembly of VIQKI D455(beta-L-homoaspartic acid)with human parainfluenza virus type 3 (HPIV3) fusion glycoprotein N-terminal heptad repeat domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2019-06-08
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.9786
Spacegroup nameP 1 21 1
Unit cell lengths39.850, 49.340, 56.180
Unit cell angles90.00, 103.61, 90.00
Refinement procedure
Resolution24.730 - 1.790
R-factor0.2091
Rwork0.207
R-free0.23210
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6nro
RMSD bond length0.015
RMSD bond angle1.405
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.7301.820
High resolution limit [Å]1.7901.790
Rmeas0.0892.151
Rpim0.0310.732
Number of reflections201021037
<I/σ(I)>13.71
Completeness [%]99.899.71
Redundancy8.58.6
CC(1/2)0.9990.395
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.529830 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM imidazole/MES monohydrate (pH 6.5), 12.5% PEG1000, 12.5% PEG3350, 12.5% 2-methyl-2,4-pentanediol

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PDB entries from 2024-05-15

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