6PNT
Structural Characterization of UDP-glycosyltransferase from Tetranychus Urticae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 77.481, 77.481, 130.953 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.880 - 1.850 |
R-factor | 0.1701 |
Rwork | 0.168 |
R-free | 0.20790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2iya |
RMSD bond length | 0.017 |
RMSD bond angle | 2.042 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.880 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.083 | 0.627 |
Rmeas | 0.090 | 0.684 |
Rpim | 0.032 | 0.267 |
Number of reflections | 39554 | 1947 |
<I/σ(I)> | 33.32 | 1.9 |
Completeness [%] | 99.3 | 99.2 |
Redundancy | 8.2 | 6.2 |
CC(1/2) | 0.731 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 5% Tacsimate pH 7.0, 0.1 M HEPES pH 7.0, 10% PEG 5000 |