6PLD
Crystal Structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F variant with 6-OH-FAD - Green fraction
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-11 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.780, 73.910, 76.980 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.789 - 1.550 |
R-factor | 0.1652 |
Rwork | 0.163 |
R-free | 0.20270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nye |
RMSD bond length | 0.006 |
RMSD bond angle | 1.179 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.780 | 1.580 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.103 | 0.488 |
Number of reflections | 48055 | 2284 |
<I/σ(I)> | 10.6 | 3.2 |
Completeness [%] | 96.1 | 93.4 |
Redundancy | 7 | 6.5 |
CC(1/2) | 0.995 | 0.896 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 298 | 0.05 M Tris-Cl pH 6.5-7.0, 10% glycerol, and 12-13% (w/v) PEG 3350, 5-10% PEG 5000 |