6PGD
WDR5delta32 bound to peptidomimetic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-22 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95370 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.698, 65.240, 97.195 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.390 - 1.500 |
R-factor | 0.15153 |
Rwork | 0.151 |
R-free | 0.16718 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6pg4 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.408 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.700 | 1.530 |
High resolution limit [Å] | 1.500 | 1.500 |
Number of reflections | 47878 | 1846 |
<I/σ(I)> | 11 | 2.4 |
Completeness [%] | 99.0 | 80.5 |
Redundancy | 7.2 | 6.5 |
CC(1/2) | 0.997 | 0.742 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 281 | 0.233 M ammonium sulfate, 0.1 M Bis-Tris chloride, pH 6.02, 26% w/v PEG8000 |