6P94
Human APE1 C65A AP-endonuclease product complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-17 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 43.585, 60.459, 71.924 |
Unit cell angles | 83.69, 79.47, 88.74 |
Refinement procedure
Resolution | 24.579 - 2.090 |
R-factor | 0.1894 |
Rwork | 0.186 |
R-free | 0.24450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.009 |
RMSD bond angle | 1.091 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.14_3260)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.581 | 2.142 |
High resolution limit [Å] | 2.090 | 2.090 |
Rmerge | 0.152 | |
Rmeas | 0.798 | |
Number of reflections | 36463 | 611 |
<I/σ(I)> | 7.81 | |
Completeness [%] | 99.2 | |
Redundancy | 3.6 | |
CC(1/2) | 0.528 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 10% PEG20000, 100 mM sodium citrate, pH 5.0, and 200 mM MgCl2 |