6P27
Structure of a nested set of N-terminally extended MHC I-peptides provides novel insights into antigen processing and presentation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2018-08-16 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.987 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.607, 81.318, 110.728 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.995 - 1.593 |
R-factor | 0.1929 |
Rwork | 0.192 |
R-free | 0.21270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1agb |
RMSD bond length | 0.006 |
RMSD bond angle | 1.076 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.650 |
High resolution limit [Å] | 1.590 | 1.590 |
Rmerge | 0.052 | |
Number of reflections | 61436 | 5682 |
<I/σ(I)> | 22.1 | |
Completeness [%] | 99.3 | 96 |
Redundancy | 8.1 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.2 M ammonium sulfate, 18% PEG4000, 0.1 M sodium cacodylate, pH 5.7 |