6OZ3
Crystal structure of broadly neutralizing antibody N49P9.1 Fab in complex with HIV-1 Clade A/E strain 93TH057 gp120 core
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 104.754, 110.454, 152.165 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.030 - 3.150 |
R-factor | 0.2453 |
Rwork | 0.243 |
R-free | 0.29540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tgt 3tnn |
RMSD bond length | 0.006 |
RMSD bond angle | 0.999 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.200 |
High resolution limit [Å] | 3.150 | 3.150 |
Rmerge | 0.138 | 0.794 |
Rpim | 0.072 | 0.414 |
Number of reflections | 14779 | 746 |
<I/σ(I)> | 12.8 | 1 |
Completeness [%] | 94.4 | 96.4 |
Redundancy | 4 | 4 |
CC(1/2) | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294 | 12% PEG 6000 0.1 M Bis-Tris pH 6.5 |