6OY8
Crystal structure of Y99G mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-19 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.950, 68.079, 86.919 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.090 - 1.530 |
R-factor | 0.15346 |
Rwork | 0.152 |
R-free | 0.17531 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.015 |
RMSD bond angle | 1.832 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.560 |
High resolution limit [Å] | 1.530 | 1.530 |
Rmeas | 0.051 | 0.276 |
Rpim | 0.170 | 0.133 |
Number of reflections | 61539 | 3012 |
<I/σ(I)> | 39.5 | |
Completeness [%] | 99.9 | 99.2 |
Redundancy | 6.6 | 4.2 |
CC(1/2) | 1.000 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3% 2-propanol, 0.1 M Tris-HCl, pH 7.5 |