6OTE
Crystal Structure of Seryl-tRNA synthetase (SerRS) from Cryptosporidium parvum complexed with L-Serylsulfamoyl Adenosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-08-02 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 92.210, 92.210, 257.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.920 - 2.950 |
R-factor | 0.2112 |
Rwork | 0.208 |
R-free | 0.25250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qne |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((1.15.2_3472)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.920 | 44.920 | 3.030 |
High resolution limit [Å] | 2.950 | 13.190 | 2.950 |
Rmerge | 0.080 | 0.029 | 0.559 |
Rmeas | 0.085 | 0.032 | 0.590 |
Total number of observations | 112243 | ||
Number of reflections | 12140 | 163 | 868 |
<I/σ(I)> | 17.83 | 30.6 | 3.95 |
Completeness [%] | 99.8 | 95.3 | 100 |
Redundancy | 9.246 | 7.147 | 9.737 |
CC(1/2) | 0.999 | 0.999 | 0.904 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 287 | CrpaA.01238.a.HZ1.PW38382 at 34.26 mg/ml was incubated with 3 mM Ser-AMS, then was mixed 1:1 with Wiz3/4(c4): 70% (v/v) MPD, 0.1 M HEPES / NaOH, pH = 7.5. Tray: 297963c4, puck: wuq4-1 |