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6OT4

Bimetallic dodecameric cage design 2 (BMC2) from cytochrome cb562

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2018-07-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameH 3 2
Unit cell lengths126.140, 126.140, 168.210
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution31.540 - 1.400
R-factor0.1663
Rwork0.166
R-free0.19090
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3m4b
RMSD bond length0.010
RMSD bond angle1.101
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.25039.2501.440
High resolution limit [Å]1.4006.2601.400
Rmerge0.0560.0211.830
Rmeas0.0590.0222.004
Rpim0.019
Number of reflections195424220014465
<I/σ(I)>20.378.580.84
Completeness [%]99.499.198.9
Redundancy9.5410.1556.138
CC(1/2)1.0001.0000.410
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298Protein solution: 2.2 mM protein with 1.65 mM Fe and 2 mM Zn added 1 hour before crystallisation. 1 ul to 1 ul drops with following mother liquor: 30% PEG400, 0.1 M TrisHCl pH 8.5, 0.2 M NaCl

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PDB entries from 2024-05-15

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