6ONI
Crystal structure of PPARgamma ligand binding domain in complex with N-CoR peptide and inverse agonist T0070907
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL12-2 |
| Synchrotron site | SSRL |
| Beamline | BL12-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-01-17 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97946 |
| Spacegroup name | P 41 21 2 |
| Unit cell lengths | 61.876, 61.876, 164.379 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 34.233 - 1.800 |
| R-factor | 0.209 |
| Rwork | 0.208 |
| R-free | 0.22640 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6c1i |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.888 |
| Data reduction software | DIALS |
| Data scaling software | SCALA |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 34.233 | 1.864 |
| High resolution limit [Å] | 1.800 | 1.800 |
| Rmerge | 0.016 | 0.138 |
| Rmeas | 0.023 | 0.195 |
| Rpim | 0.016 | 0.138 |
| Number of reflections | 30550 | 2995 |
| <I/σ(I)> | 21.08 | 3.29 |
| Completeness [%] | 99.5 | 99.93 |
| Redundancy | 2 | 2 |
| CC(1/2) | 1.000 | 0.956 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.2M Ammonium sulfate 0.1M MES, pH 6.5 30% w/v, PEG 8000 |






