6ONI
Crystal structure of PPARgamma ligand binding domain in complex with N-CoR peptide and inverse agonist T0070907
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 61.876, 61.876, 164.379 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.233 - 1.800 |
R-factor | 0.209 |
Rwork | 0.208 |
R-free | 0.22640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c1i |
RMSD bond length | 0.007 |
RMSD bond angle | 0.888 |
Data reduction software | DIALS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.233 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.016 | 0.138 |
Rmeas | 0.023 | 0.195 |
Rpim | 0.016 | 0.138 |
Number of reflections | 30550 | 2995 |
<I/σ(I)> | 21.08 | 3.29 |
Completeness [%] | 99.5 | 99.93 |
Redundancy | 2 | 2 |
CC(1/2) | 1.000 | 0.956 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.2M Ammonium sulfate 0.1M MES, pH 6.5 30% w/v, PEG 8000 |