6ON4
Crystal structure of the GntR-type sialoregulator NanR from Escherichia coli, in complex with sialic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.771, 87.846, 73.869 |
Unit cell angles | 90.00, 103.00, 90.00 |
Refinement procedure
Resolution | 43.920 - 2.100 |
R-factor | 0.1834 |
Rwork | 0.181 |
R-free | 0.22950 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.3) |
Phasing software | Auto-Rickshaw |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.920 | 43.920 | 2.160 |
High resolution limit [Å] | 2.100 | 8.900 | 2.100 |
Rmerge | 0.045 | 0.023 | 0.547 |
Rmeas | 0.053 | 0.027 | 0.676 |
Rpim | 0.028 | 0.014 | 0.391 |
Total number of observations | 96712 | 1384 | 5260 |
Number of reflections | 28505 | 402 | 2024 |
<I/σ(I)> | 13.6 | 40.2 | 1.8 |
Completeness [%] | 98.2 | 98.8 | 86.6 |
Redundancy | 3.4 | 3.4 | 2.6 |
CC(1/2) | 0.999 | 0.999 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 280 | 0.2 M Sodium acetate trihydrate, 0.1 M Sodium HEPES, 25 % (w/v) PEG 3350 |