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6OMZ

Crystal Structure of Dihydropteroate synthase from Mycobacterium smegmatis with bound 6-hydroxymethylpterin-monophosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2019-04-11
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameC 2 2 21
Unit cell lengths47.720, 96.410, 135.070
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.904 - 1.850
R-factor0.1537
Rwork0.151
R-free0.18610
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1eye
RMSD bond length0.006
RMSD bond angle0.806
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX ((1.15.2_3472: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]32.90432.9041.900
High resolution limit [Å]1.8508.2701.850
Rmerge0.0720.0250.500
Rmeas0.0780.0270.555
Total number of observations183484
Number of reflections265663511647
<I/σ(I)>19.7252.583.03
Completeness [%]98.298.684.1
Redundancy6.9076.1055.073
CC(1/2)0.9990.9990.856
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5290MysmA.01019.b.B1.PW38386 was crystallized at 14 mg/mL and 14 ??C with 2.5 mM 6-Hydroxymethylpterin-monophosphate and mixed 1:1 with a solution of 0.2 M ammonium citrate dibasic pH 5.0 and 20% (w/v) PEG3350, 20% ethylene glycol cryo. Tray: 308720f3, puck: bqx9-6.

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PDB entries from 2024-05-15

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