6OMZ
Crystal Structure of Dihydropteroate synthase from Mycobacterium smegmatis with bound 6-hydroxymethylpterin-monophosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-11 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 47.720, 96.410, 135.070 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.904 - 1.850 |
R-factor | 0.1537 |
Rwork | 0.151 |
R-free | 0.18610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1eye |
RMSD bond length | 0.006 |
RMSD bond angle | 0.806 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.904 | 32.904 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.072 | 0.025 | 0.500 |
Rmeas | 0.078 | 0.027 | 0.555 |
Total number of observations | 183484 | ||
Number of reflections | 26566 | 351 | 1647 |
<I/σ(I)> | 19.72 | 52.58 | 3.03 |
Completeness [%] | 98.2 | 98.6 | 84.1 |
Redundancy | 6.907 | 6.105 | 5.073 |
CC(1/2) | 0.999 | 0.999 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 290 | MysmA.01019.b.B1.PW38386 was crystallized at 14 mg/mL and 14 ??C with 2.5 mM 6-Hydroxymethylpterin-monophosphate and mixed 1:1 with a solution of 0.2 M ammonium citrate dibasic pH 5.0 and 20% (w/v) PEG3350, 20% ethylene glycol cryo. Tray: 308720f3, puck: bqx9-6. |