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6OJM

Crystal structure of 1,4-dihydroxy-2-naphthoyl-CoA synthase Elizabethkingia anophelis NUHP1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2018-04-12
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 3 2 1
Unit cell lengths138.490, 138.490, 141.430
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.876 - 1.600
R-factor0.1453
Rwork0.145
R-free0.17530
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3t8a chain A
RMSD bond length0.007
RMSD bond angle0.910
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]43.87643.8761.640
High resolution limit [Å]1.6007.1601.600
Rmerge0.0530.0210.500
Rmeas0.0570.0240.545
Number of reflections204876244314987
<I/σ(I)>21.9460.933.46
Completeness [%]99.797.499.4
Redundancy6.1915.6916.25
CC(1/2)0.9990.9990.887
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290Molecular Dimensions Morpheus screen, C7: 10% (w/v) PEG 4000, 20% (v/v) glycerol, 30mM of each sodium nitrate, disodium hydrogen phosphate, ammonium sulfate: 100mM MOPS/HEPES-Na pH 7.5: ElanA.01530.a.B1.PW38414 at 20.1 mg/ml: cryo: direct: tray 298241c7: puck uya9-1

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PDB entries from 2024-05-15

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