6OJM
Crystal structure of 1,4-dihydroxy-2-naphthoyl-CoA synthase Elizabethkingia anophelis NUHP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-12 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 138.490, 138.490, 141.430 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.876 - 1.600 |
R-factor | 0.1453 |
Rwork | 0.145 |
R-free | 0.17530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3t8a chain A |
RMSD bond length | 0.007 |
RMSD bond angle | 0.910 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.876 | 43.876 | 1.640 |
High resolution limit [Å] | 1.600 | 7.160 | 1.600 |
Rmerge | 0.053 | 0.021 | 0.500 |
Rmeas | 0.057 | 0.024 | 0.545 |
Number of reflections | 204876 | 2443 | 14987 |
<I/σ(I)> | 21.94 | 60.93 | 3.46 |
Completeness [%] | 99.7 | 97.4 | 99.4 |
Redundancy | 6.191 | 5.691 | 6.25 |
CC(1/2) | 0.999 | 0.999 | 0.887 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Molecular Dimensions Morpheus screen, C7: 10% (w/v) PEG 4000, 20% (v/v) glycerol, 30mM of each sodium nitrate, disodium hydrogen phosphate, ammonium sulfate: 100mM MOPS/HEPES-Na pH 7.5: ElanA.01530.a.B1.PW38414 at 20.1 mg/ml: cryo: direct: tray 298241c7: puck uya9-1 |