6OIL
Crystal structure of human VISTA extracellular domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 29.169, 64.089, 37.695 |
Unit cell angles | 90.00, 91.73, 90.00 |
Refinement procedure
Resolution | 29.156 - 1.850 |
R-factor | 0.1821 |
Rwork | 0.180 |
R-free | 0.22260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Rosetta generated models |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.156 | 29.156 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.096 | 0.039 | 1.467 |
Rmeas | 0.101 | 0.042 | 1.562 |
Total number of observations | 107740 | ||
Number of reflections | 11704 | 144 | 843 |
<I/σ(I)> | 13 | 41.65 | 1.46 |
Completeness [%] | 98.4 | 100 | 96.2 |
Redundancy | 9.222 | 9.215 | 8.437 |
CC(1/2) | 0.999 | 0.999 | 0.609 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 18% PEG3350, 0.075M NaBr, 0.05M HAT buffer(combination of HEPES (7.5), ADA (6.5), and TrisHCl (8.0)) |