6OHQ
Structure of compound 4 bound human Phospholipase D2 catalytic domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 90.227, 131.517, 106.414 |
Unit cell angles | 90.00, 112.05, 90.00 |
Refinement procedure
Resolution | 49.315 - 2.694 |
R-factor | 0.2091 |
Rwork | 0.206 |
R-free | 0.25870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ohm |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.800 |
High resolution limit [Å] | 2.690 | 2.700 |
Number of reflections | 43049 | 4306 |
<I/σ(I)> | 3.9 | |
Completeness [%] | 98.2 | |
Redundancy | 3.4 | |
CC(1/2) | 0.990 | 0.990 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2M ammonium sulfate, 20% PEG3350, 0.1M bis-tris pH 6.7 |