6OBO
Ricin A chain bound to VHH antibody V6A6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-23 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 123.242, 112.929, 93.081 |
Unit cell angles | 90.00, 127.49, 90.00 |
Refinement procedure
Resolution | 48.894 - 1.900 |
R-factor | 0.2089 |
Rwork | 0.207 |
R-free | 0.24380 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.057 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.160 | 1.900 |
Rmerge | 0.308 | 0.107 | 1.353 |
Rmeas | 0.340 | 0.119 | 1.536 |
Rpim | 0.142 | 0.051 | 0.712 |
Number of reflections | 79441 | 4054 | 3899 |
<I/σ(I)> | 3.2 | ||
Completeness [%] | 99.9 | 99.9 | 99.4 |
Redundancy | 5.5 | 5.4 | 3.9 |
CC(1/2) | 0.991 | 0.460 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 100 mM imidazole (pH 8.0), 200 mM calcium acetate, and 15% PEG 8,000 |