6OAD
2.05 Angstrom Resolution Crystal Structure of Aminopeptidase B from Escherichia coli str. K-12 substr. MG1655.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-02-05 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 150.667, 114.761, 161.171 |
Unit cell angles | 90.00, 92.02, 90.00 |
Refinement procedure
Resolution | 29.880 - 2.050 |
R-factor | 0.17398 |
Rwork | 0.172 |
R-free | 0.21473 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ij3 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.473 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MoRDa |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.090 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.098 | 0.791 |
Rmeas | 0.112 | 0.905 |
Rpim | 0.054 | 0.437 |
Number of reflections | 338775 | 16506 |
<I/σ(I)> | 11.9 | 1.9 |
Completeness [%] | 98.8 | 96.4 |
Redundancy | 4.1 | 4.1 |
CC(1/2) | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 292 | Protein: 6.0 mg/ml, 0.01M Tris pH 8.3; Screen: PEGs II (H8), 0.2M Calcium acetate, 0.1M HEPES pH 7.5, 10% (w/v) PEG 8000. Cryo: reservoir + 20% Ethylene glycol. |