6O68
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Ciglitazone
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-08 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97741 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.390, 59.960, 117.610 |
Unit cell angles | 90.00, 103.02, 90.00 |
Refinement procedure
Resolution | 49.900 - 2.780 |
R-factor | 0.2398 |
Rwork | 0.233 |
R-free | 0.29820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1prg |
RMSD bond length | 0.010 |
RMSD bond angle | 1.285 |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.900 | 2.879 |
High resolution limit [Å] | 2.780 | 2.780 |
Rmerge | 0.059 | 0.457 |
Rmeas | 0.083 | 0.647 |
Rpim | 0.059 | 0.457 |
Number of reflections | 15994 | 1605 |
<I/σ(I)> | 8.13 | 1.71 |
Completeness [%] | 99.8 | 99.94 |
Redundancy | 1.9 | 1.9 |
CC(1/2) | 0.996 | 0.642 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 293 | 0.8M SODIUM CITRATE, 100mM MOPS, pH 7.6 |